Yo Akiyama

Yo Akiyama

MIT EECS PhD student

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A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.

Pages

Posts

portfolio

publications

Genomic and transcriptomic analysis of checkpoint blockade response in advanced non-small cell lung cancer

Published in Nature Genetics, 2023

A. Ravi†, M.D. Hellmann†, M.B. Arniella†, M. Holton, S.S. Freeman, V. Naranbhai, C. Stewart, I. Leshchiner, J. Kim, Y. Akiyama, A.T. Griffin, N.I. Vokes, M.Sakhi, V.Kamesan, H.Rizvi, B.Ricciuti, P.M. Forde, V.Anagnostou, J.W. Riess, D.L. Gibbons, N.A. Pennell, V.Velcheti, S.R. Digumarthy, M. Mino-Kenudson, A. Califano, J.V. Heymach, R.S. Herbst, J.R. Brahmer, K.A. Schalper, V.E. Velculescu, B.S. Henick, N. Rizvi, P.A. Jänne, M.M. Awad, A. Chow, B.D. Greenbaum, M. Luksza, A.T. Shaw, J. Wolchok, N. Hacohen*, G. Getz*, J.F. Gainor*

Proteogenomic data and resources for pan-cancer analysis

Published in Cancer Cell, 2023

Li, Y.†, Dou, Y.†, Leprevost, F.V.†, Geffen, Y.†, Calinawan, A.P.†, Aguet, F., Akiyama, Y., Anand, S., Birger, C., Cao, S., Chaudhary, R., Chilappagari, P., Cieslik, M., Colaprico, A., Zhou, D.C., Day, C., Domagalski, M.J., Selvan, M.E., Fenyö, D., Foltz, S.M., Francis, A., Gonzalez-Robles, T., Gümüş, Z.H., Heiman, D., Holck, M., Hong, R., Hu, Y., Jaehnig, E.J., Ji, J., Jiang, W., Katsnelson, L., Ketchum, K.A., Klein, R.J., Lei, J.T., Liang, W., Liao, Y., Lindgren, C.M., Ma, W., Ma, L., MacCoss, M.J., Rodrigues, F.M., McKerrow, W., Nguyen, N., Oldroyd, R., Pilozzi, A., Pugliese, P., Reva, B., Rudnick, P., Ruggles, K.V., Rykunov, D., Savage, S.R., Schnaubelt, M., Schraink, T., Shi, Z., Singhal, D., Song, X., Storrs, E., Terekhanova, N.V., Thangudu, R.R., Thiagarajan, M., Wang, L., Wang, J.M., Wang, Y., Wen, B., Wu, Y., Wyczalkowski, M.A., Xin, Y., Yao, L., Yi, X., Zhang, H., Zhang, Q., Zuhl, M., Getz, G., Ding, L., Nesvizhskii, A.I., Wang, P., Robles, A.I.*, Zhang, B.*, Payne, S.H.*

Pan-cancer proteogenomics connects oncogenic drivers to functional states

Published in Cell, 2023

Li, Y.†, Porta-Pardo, E.†, Tokheim, C.†, Bailey, M.H.†, Yaron, T.M.†, Stathias, V., Geffen, Y., Imbach, K.J., Cao, S., Anand, S., Akiyama, Y., Liu, W., Wyczalkowski, M.A., Song, Y., Storrs, E.P., Wendl, M.C., Zhang, W., Sibai, M., Ruiz-Serra, V., Liang, W., Terekhanova, N.V., Rodrigues, F.M., Clauser, K.R., Heiman, D.I., Zhang, Q., Aguet, F., Calinawan, A.P., Dhanasekaran, S.M., Birger, C., Satpathy, S., Zhou, D.C., Wang, L., Baral, J., Johnson, J.L., Huntsman, E.M., Pugliese, P., Colaprico, A., Iavarone, A., Chheda, M.G., Ricketts, C.J., Fenyö, D., Payne, S.H., Rodriguez, H., Robles, A.I., Gillette, M.A., Kumar-Sinha, C., Lazar, A.J., Cantley, L.C.*, Getz, G.*, Ding, L.*

Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation

Published in Cell, 2023

Geffen, Y.†, Anand, S.†, Akiyama, Y.†, Yaron, T.M.†, Song, Y.†, Johnson, J.L., Govindan, A., Babur, Ö., Li, Y., Huntsman, E., Wang, L., Birger, C., Heiman, D.I., Zhang, Q., Miller, M., Maruvka, Y.E., Haradhvala, N.J., Calinawan, A., Belkin, S., Kerelsky, A., Clauser, K.R., Krug, K., Satpathy, S., Payne, S.H., Mani, D., Gillette, M.A., Dhanasekaran, S.M., Thiagarajan, M., Mesri, M., Rodriguez, H., Robles, A.I., Carr, S.A., Lazar, A.J., Aguet, F.*, Cantley, L.C.*, Ding, L.*, Getz, G.*

talks

teaching

Teaching experience 1

Undergraduate course, University 1, Department, 2014

This is a description of a teaching experience. You can use markdown like any other post.

Teaching experience 2

Workshop, University 1, Department, 2015

This is a description of a teaching experience. You can use markdown like any other post.